| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | SS Nomar Garciaparra Bos |
| 2 | 22nd | 2B Craig Biggio Hou |
| 3 | 27th | 1B Todd Helton Col |
| 4 | 46th | OF Andruw Jones Atl |
| 5 | 51st | RP Armando Benitez NYN |
| 6 | 70th | RP John Wetteland Tex |
| 7 | 75th | 3B Robin Ventura NYN |
| 8 | 94th | SP Al Leiter NYN |
| 9 | 99th | SP Andy Pettitte NYA |
| 10 | 118th | C Jorge Posada NYA |
| 11 | 123rd | OF Jeffrey Hammonds Col |
| 12 | 142nd | DH Jose Canseco TB |
| 13 | 147th | SP David Wells Tor |
| 14 | 166th | SP Chan Ho Park LA |
| 15 | 171st | SP Octavio Dotel Hou |
| 16 | 190th | OF Juan Encarnacion Det |
| 17 | 195th | SP Rick Reed NYN |
| 18 | 214th | OF Doug Glanville Phi |
| 19 | 219th | RP Todd Jones Det |
| 20 | 238th | OF Rondell White Mon |
| 21 | 243rd | 2B David Bell Sea |
| 22 | 262nd | 3B Corey Koskie Min |
| 23 | 267th | SP Hideki Irabu Mon |
| 24 | 286th | 1B Rico Brogna Phi |
| 25 | 291st | OF Eric Davis StL |
| 26 | 310th | SS Rey Ordonez NYN |
| 27 | 315th | SP Bobby J. Jones NYN |