| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Alex Rodriguez Sea |
| 2 | 24th | 1B Rafael Palmeiro Tex |
| 3 | 25th | RP Billy Wagner Hou |
| 4 | 48th | OF Magglio Ordonez ChA |
| 5 | 49th | OF Ruben Mateo Tex |
| 6 | 72nd | 2B Chuck Knoblauch NYA |
| 7 | 73rd | OF Moises Alou Hou |
| 8 | 96th | SP Kris Benson Pit |
| 9 | 97th | 3B Adrian Beltre LA |
| 10 | 120th | SP Rick Ankiel StL |
| 11 | 121st | C Todd Hundley LA |
| 12 | 144th | RP Paul Shuey Cle |
| 13 | 145th | OF Reggie Sanders Atl |
| 14 | 168th | SP Chris Carpenter Tor |
| 15 | 169th | 1B John Olerud Sea |
| 16 | 192nd | 3B Aramis Ramirez Pit |
| 17 | 193rd | SP Sterling Hitchcock SD |
| 18 | 216th | 1B Daryle Ward Hou |
| 19 | 217th | 2B Homer Bush Tor |
| 20 | 240th | SP Roy Halladay Tor |
| 21 | 241st | RP Kazuhiro Sasaki Sea |
| 22 | 264th | 2B Fernando Vina StL |
| 23 | 265th | OF Darin Erstad Ana |
| 24 | 288th | SP Scott Elarton Hou |
| 25 | 289th | OF David Justice Cle |
| 26 | 312th | C Dan Wilson Sea |
| 27 | 313th | SS Alex Cora LA |