| Round | Overall | Player |
|---|---|---|
| 1 | 12th | 2B Roberto Alomar Cle |
| 2 | 13th | OF Shawn Green LA |
| 3 | 36th | OF Brian S. Giles Pit |
| 4 | 37th | OF Bobby Abreu Phi |
| 5 | 60th | C Javy Lopez Atl |
| 6 | 61st | OF Carlos Beltran KC |
| 7 | 84th | SP Andy Ashby Phi |
| 8 | 85th | 1B Mike Sweeney KC |
| 9 | 108th | 3B Dean Palmer Det |
| 10 | 109th | RP Mike Jackson Phi |
| 11 | 132nd | RP Scott Williamson Cin |
| 12 | 133rd | SP Jose Rosado KC |
| 13 | 156th | SP Todd Stottlemyre Ari |
| 14 | 157th | RP Bob Wickman Mil |
| 15 | 180th | SP Todd Ritchie Pit |
| 16 | 181st | DH John Jaha Oak |
| 17 | 204th | SS Jose Hernandez Mil |
| 18 | 205th | 3B Bill Mueller SF |
| 19 | 228th | SS Rafael Furcal Atl |
| 20 | 229th | C Brad Ausmus Det |
| 21 | 252nd | SP Omar Olivares Oak |
| 22 | 253rd | SP Sidney Ponson Bal |
| 23 | 276th | 2B Luis Castillo Fla |
| 24 | 277th | OF Mark Quinn KC |
| 25 | 300th | SP John Smoltz Atl |
| 26 | 301st | SP Ed Yarnall NYA |
| 27 | 324th | 1B Brad Fullmer Tor |