| Round | Overall | Player |
|---|---|---|
| 1 | 9th | C Ivan Rodriguez Tex |
| 2 | 16th | 3B Fernando Tatis StL |
| 3 | 33rd | SP Mike Mussina Bal |
| 4 | 40th | 1B Sean Casey Cin |
| 5 | 57th | 2B Ray Durham ChA |
| 6 | 64th | OF Johnny Damon KC |
| 7 | 81st | SS Miguel Tejada Oak |
| 8 | 88th | SP Brad Radke Min |
| 9 | 105th | 3B Eric Chavez Oak |
| 10 | 112th | SP Aaron Sele Sea |
| 11 | 129th | OF J.D. Drew StL |
| 12 | 136th | RP Danny Graves Cin |
| 13 | 153rd | RP Jason Isringhausen Oak |
| 14 | 160th | SP Dustin Hermanson Mon |
| 15 | 177th | OF Geoff Jenkins Mil |
| 16 | 184th | OF Preston Wilson Fla |
| 17 | 201st | SP Matt Clement SD |
| 18 | 208th | C Mitch Meluskey Hou |
| 19 | 225th | OF Richard Hidalgo Hou |
| 20 | 232nd | 2B Delino DeShields Bal |
| 21 | 249th | 1B Kevin Barker Mil |
| 22 | 256th | OF Ellis Burks SF |
| 23 | 273rd | SP Eric Gagne LA |
| 24 | 280th | SP Joe Nathan SF |
| 25 | 297th | OF Jose Cruz Jr Tor |
| 26 | 304th | SP Brett Tomko Sea |
| 27 | 321st | C Matthew LeCroy Min |