| Round | Overall | Player |
|---|---|---|
| 1 | 10th | 3B Chipper Jones Atl |
| 2 | 15th | OF Vladimir Guerrero Mon |
| 3 | 34th | C Javy Lopez Atl |
| 4 | 39th | SP Greg Maddux Atl |
| 5 | 58th | SP Tom Glavine Atl |
| 6 | 63rd | SP Roger Clemens NYA |
| 7 | 82nd | 2B Jay Bell Ari |
| 8 | 87th | OF Brian Jordan Atl |
| 9 | 106th | 1B John Olerud Sea |
| 10 | 111th | SS Neifi Perez Col |
| 11 | 130th | 1B Richie Sexson Cle |
| 12 | 135th | DH Edgar Martinez Sea |
| 13 | 154th | SP Dustin Hermanson Mon |
| 14 | 159th | OF Luis Gonzalez Ari |
| 15 | 178th | C Charles Johnson Bal |
| 16 | 183rd | SP Rick Helling Tex |
| 17 | 202nd | SP Charles Nagy Cle |
| 18 | 207th | OF Paul O'Neill NYA |
| 19 | 226th | SP Dave Mlicki Det |
| 20 | 231st | OF Ruben Mateo Tex |
| 21 | 250th | 2B Warren Morris Pit |
| 22 | 255th | 3B Todd Zeile NYN |
| 23 | 274th | OF Butch Huskey Min |
| 24 | 279th | SS Mike Bordick Bal |
| 25 | 298th | 3B Bill Mueller SF |
| 26 | 303rd | C Einar Diaz Cle |
| 27 | 322nd | OF Dmitri Young Cin |