| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | SS Derek Jeter NYA |
| 2 | 22nd | OF Albert Belle Bal |
| 3 | 27th | C Mike Lieberthal Phi |
| 4 | 46th | OF Bobby Abreu Phi |
| 5 | 51st | SP Shane Reynolds Hou |
| 6 | 70th | 2B Chuck Knoblauch NYA |
| 7 | 75th | SP Andy Ashby Phi |
| 8 | 94th | 3B Troy Glaus Ana |
| 9 | 99th | 1B Kevin Young Pit |
| 10 | 118th | OF Dante Bichette Cin |
| 11 | 123rd | SP Jamie Moyer Sea |
| 12 | 142nd | RP Bob Howry ChA |
| 13 | 147th | SP Pete Harnisch Cin |
| 14 | 166th | RP Todd Jones Det |
| 15 | 171st | SP Kerry Wood ChN |
| 16 | 190th | OF Brady Anderson Bal |
| 17 | 195th | SP Hideo Nomo Det |
| 18 | 214th | SP Jon Lieber ChN |
| 19 | 219th | 3B Joe Randa KC |
| 20 | 238th | 1B Fred McGriff TB |
| 21 | 243rd | RP Terry Mulholland Atl |
| 22 | 262nd | SP Pedro Astacio Col |
| 23 | 267th | OF Marquis Grissom Mil |
| 24 | 286th | SS Jose Valentin ChA |
| 25 | 291st | 2B Quilvio Veras Atl |
| 26 | 310th | C Ben Davis SD |
| 27 | 315th | OF Bo Porter Tex |