| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | OF Ken Griffey Jr Cin |
| 2 | 23rd | OF Juan Gonzalez Det |
| 3 | 26th | RP Billy Wagner Hou |
| 4 | 47th | 3B Matt Williams Ari |
| 5 | 50th | 1B Jim Thome Cle |
| 6 | 71st | 2B Jeff Kent SF |
| 7 | 74th | RP John Rocker Atl |
| 8 | 95th | SP Curt Schilling Phi |
| 9 | 98th | 1B Frank Thomas ChA |
| 10 | 119th | C Eddie Taubensee Cin |
| 11 | 122nd | RP Paul Shuey Cle |
| 12 | 143rd | RP Derek Lowe Bos |
| 13 | 146th | SS Miguel Tejada Oak |
| 14 | 167th | OF David Justice Cle |
| 15 | 170th | SP Kent Bottenfield Ana |
| 16 | 191st | SP Scott Erickson Bal |
| 17 | 194th | SP Omar Olivares Oak |
| 18 | 215th | OF Troy O'Leary Bos |
| 19 | 218th | SP Octavio Dotel Hou |
| 20 | 239th | DH John Jaha Oak |
| 21 | 242nd | SP Wilson Alvarez TB |
| 22 | 263rd | 3B Cal Ripken Bal |
| 23 | 266th | 2B Mike Lansing Col |
| 24 | 287th | SP Kirk Rueter SF |
| 25 | 290th | SP Woody Williams SD |
| 26 | 311th | SP Jeff Fassero Bos |
| 27 | 314th | C Dan Wilson Sea |