| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Alex Rodriguez Sea |
| 2 | 24th | SP Kevin Brown LA |
| 3 | 25th | 1B Carlos Delgado Tor |
| 4 | 48th | SP Jose Lima Hou |
| 5 | 49th | RP Armando Benitez NYN |
| 6 | 72nd | RP Troy Percival Ana |
| 7 | 73rd | 2B Ray Durham ChA |
| 8 | 96th | 3B Vinny Castilla TB |
| 9 | 97th | OF Moises Alou Hou |
| 10 | 120th | C Darrin Fletcher Tor |
| 11 | 121st | OF Reggie Sanders Atl |
| 12 | 144th | SP Eric Milton Min |
| 13 | 145th | OF Jermaine Dye KC |
| 14 | 168th | OF Preston Wilson Fla |
| 15 | 169th | SP Chris Carpenter Tor |
| 16 | 192nd | SP Todd Ritchie Pit |
| 17 | 193rd | SP Rick Ankiel StL |
| 18 | 216th | SP Rick Reed NYN |
| 19 | 217th | 1B Mike Sweeney KC |
| 20 | 240th | 3B Corey Koskie Min |
| 21 | 241st | 2B Todd Walker Min |
| 22 | 264th | C John Flaherty TB |
| 23 | 265th | SS Alex Gonzalez Fla |
| 24 | 288th | OF Carlos Lee ChA |
| 25 | 289th | SP Rolando Arrojo Col |
| 26 | 312th | SP Jeff Weaver Det |
| 27 | 313th | RP Ron Villone Cin |