| Round | Overall | Player |
|---|---|---|
| 1 | 6th | SP Pedro Martinez Bos |
| 2 | 19th | 1B Todd Helton Col |
| 3 | 30th | SP Mike Hampton NYN |
| 4 | 43rd | RP Ugueth Urbina Mon |
| 5 | 54th | 1B Mo Vaughn Ana |
| 6 | 67th | SS Omar Vizquel Cle |
| 7 | 78th | OF Carlos Beltran KC |
| 8 | 91st | RP Mike Jackson Phi |
| 9 | 102nd | 3B Tony Batista Tor |
| 10 | 115th | C Todd Hundley LA |
| 11 | 126th | RP Danny Graves Cin |
| 12 | 139th | SP Kenny Rogers Tex |
| 13 | 150th | OF Doug Glanville Phi |
| 14 | 163rd | OF Ray Lankford StL |
| 15 | 174th | OF Geoff Jenkins Mil |
| 16 | 187th | SP Pat Hentgen StL |
| 17 | 198th | SP Ramon Martinez Bos |
| 18 | 211th | SP Andy Benes StL |
| 19 | 222nd | SP Hideki Irabu Mon |
| 20 | 235th | SP Sterling Hitchcock SD |
| 21 | 246th | C Ben Petrick Col |
| 22 | 259th | 1B Travis Lee Ari |
| 23 | 270th | SP Darren Oliver Tex |
| 24 | 283rd | SP Kelvim Escobar Tor |
| 25 | 294th | 2B Luis Castillo Fla |
| 26 | 307th | SP Roy Halladay Tor |
| 27 | 318th | 3B Aramis Ramirez Pit |