| Round | Overall | Player |
|---|---|---|
| 1 | 8th | OF Barry Bonds SF |
| 2 | 17th | OF Larry Walker Col |
| 3 | 32nd | SP Mike Mussina Bal |
| 4 | 41st | 3B Fernando Tatis StL |
| 5 | 56th | RP Billy Koch Tor |
| 6 | 65th | SP David Cone NYA |
| 7 | 80th | RP Jeff Shaw LA |
| 8 | 89th | OF Jim Edmonds StL |
| 9 | 104th | 1B Tony Clark Det |
| 10 | 113th | OF Darin Erstad Ana |
| 11 | 128th | C Brad Ausmus Det |
| 12 | 137th | SP Esteban Loaiza Tex |
| 13 | 152nd | SP Steve Woodard Mil |
| 14 | 161st | SP Darryl Kile StL |
| 15 | 176th | 2B Carlos Febles KC |
| 16 | 185th | SP Javier Vazquez Mon |
| 17 | 200th | SP Scott Elarton Hou |
| 18 | 209th | 1B Paul Konerko ChA |
| 19 | 224th | RP Orber Moreno KC |
| 20 | 233rd | 2B Randy Velarde Oak |
| 21 | 248th | SS Chris Gomez SD |
| 22 | 257th | OF Ron Gant Phi |
| 23 | 272nd | 1B David Segui Tex |
| 24 | 281st | SS Orlando Cabrera Mon |
| 25 | 296th | OF Gabe Kapler Tex |
| 26 | 305th | OF Bob Higginson Det |
| 27 | 320th | C Eli Marrero StL |