| Round | Overall | Player |
|---|---|---|
| 1 | 4th | SS Nomar Garciaparra Bos |
| 2 | 21st | C Jason Kendall Pit |
| 3 | 28th | 2B Edgardo Alfonzo NYN |
| 4 | 45th | RP John Wetteland Tex |
| 5 | 52nd | OF Brian S. Giles Pit |
| 6 | 69th | 1B Jason Giambi Oak |
| 7 | 76th | OF Magglio Ordonez ChA |
| 8 | 93rd | 3B Robin Ventura NYN |
| 9 | 100th | OF Tim Salmon Ana |
| 10 | 117th | RP Dave Veres StL |
| 11 | 124th | SP Brad Radke Min |
| 12 | 141st | SP Andy Pettitte NYA |
| 13 | 148th | OF J.D. Drew StL |
| 14 | 165th | SP Denny Neagle Cin |
| 15 | 172nd | SP Kevin Appier Oak |
| 16 | 189th | SP Mike Sirotka ChA |
| 17 | 196th | RP Ricky Bottalico KC |
| 18 | 213th | OF Kenny Lofton Cle |
| 19 | 220th | SP Jeff Suppan KC |
| 20 | 237th | SP Todd Stottlemyre Ari |
| 21 | 244th | SP Paul Byrd Phi |
| 22 | 261st | 3B Phil Nevin SD |
| 23 | 268th | SP Ryan Rupe TB |
| 24 | 285th | C Ramon Hernandez Oak |
| 25 | 292nd | OF Jay Buhner Sea |
| 26 | 309th | 1B Ryan Klesko SD |
| 27 | 316th | SP Kip Wells ChA |