| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | SS Nomar Garciaparra Bos |
| 2 | 22nd | C Jason Kendall Pit |
| 3 | 27th | 2B Edgardo Alfonzo NYN |
| 4 | 46th | SP Greg Maddux Atl |
| 5 | 51st | SP Mike Mussina Bal |
| 6 | 70th | OF Jeromy Burnitz Mil |
| 7 | 75th | RP Roberto Hernandez TB |
| 8 | 94th | OF Shannon Stewart Tor |
| 9 | 99th | 3B Adrian Beltre LA |
| 10 | 118th | SP Kerry Wood ChN |
| 11 | 123rd | 1B Richie Sexson Cle |
| 12 | 142nd | OF Rusty Greer Tex |
| 13 | 147th | SP Chan Ho Park LA |
| 14 | 166th | 1B John Olerud Sea |
| 15 | 171st | OF Reggie Sanders Atl |
| 16 | 190th | SP Rick Helling Tex |
| 17 | 195th | 2B Carlos Febles KC |
| 18 | 214th | OF Jim Edmonds StL |
| 19 | 219th | RP Ramiro Mendoza NYA |
| 20 | 238th | SP Ryan Rupe TB |
| 21 | 243rd | OF Derek Bell NYN |
| 22 | 262nd | SP Brett Tomko Sea |
| 23 | 267th | C Ben Davis SD |
| 24 | 286th | SP Livan Hernandez SF |
| 25 | 291st | 3B Michael Barrett Mon |
| 26 | 310th | RP Rod Beck Bos |
| 27 | 315th | RP Mike Trombley Bal |