| Round | Overall | Player |
|---|---|---|
| 1 | 6th | C Ivan Rodriguez Tex |
| 2 | 19th | 3B Jeff Cirillo Col |
| 3 | 30th | OF Bernie Williams NYA |
| 4 | 43rd | 2B Chuck Knoblauch NYA |
| 5 | 54th | SS Neifi Perez Col |
| 6 | 67th | RP Jeff Shaw LA |
| 7 | 78th | OF Carlos Beltran KC |
| 8 | 91st | SP Tom Glavine Atl |
| 9 | 102nd | SP Rick Ankiel StL |
| 10 | 115th | 1B Erubiel Durazo Ari |
| 11 | 126th | 1B Tino Martinez NYA |
| 12 | 139th | RP Scott Williamson Cin |
| 13 | 150th | 3B Eric Chavez Oak |
| 14 | 163rd | OF Kenny Lofton Cle |
| 15 | 174th | SP Darryl Kile StL |
| 16 | 187th | C Matthew LeCroy Min |
| 17 | 198th | SS Alex Gonzalez Fla |
| 18 | 211th | 2B Warren Morris Pit |
| 19 | 222nd | RP David Lee Col |
| 20 | 235th | SP Darren Dreifort LA |
| 21 | 246th | SP Kip Wells ChA |
| 22 | 259th | SP Hideki Irabu Mon |
| 23 | 270th | OF Trot Nixon Bos |
| 24 | 283rd | SP Esteban Loaiza Tex |
| 25 | 294th | OF Tom Goodwin Col |
| 26 | 307th | 1B Ryan Klesko SD |
| 27 | 318th | OF Garret Anderson Ana |