| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Alex Rodriguez Sea |
| 2 | 24th | OF Barry Bonds SF |
| 3 | 25th | OF Albert Belle Bal |
| 4 | 48th | 2B Jay Bell Ari |
| 5 | 49th | SP Mike Hampton NYN |
| 6 | 72nd | 3B Dean Palmer Det |
| 7 | 73rd | RP Troy Percival Ana |
| 8 | 96th | 1B Kevin Young Pit |
| 9 | 97th | SP David Cone NYA |
| 10 | 120th | C Eddie Taubensee Cin |
| 11 | 121st | SP Andy Pettitte NYA |
| 12 | 144th | OF Luis Gonzalez Ari |
| 13 | 145th | RP Bob Wickman Mil |
| 14 | 168th | DH John Jaha Oak |
| 15 | 169th | RP Mike Williams Pit |
| 16 | 192nd | C Charles Johnson Bal |
| 17 | 193rd | OF Steve Finley Ari |
| 18 | 216th | SP Andy Benes StL |
| 19 | 217th | SP Dave Burba Cle |
| 20 | 240th | 1B Mark Grace ChN |
| 21 | 241st | SP Kevin Tapani ChN |
| 22 | 264th | 2B David Bell Sea |
| 23 | 265th | OF Brady Anderson Bal |
| 24 | 288th | RP Jose Mesa Sea |
| 25 | 289th | 3B Ed Sprague SD |
| 26 | 312th | SP Brian Moehler Det |
| 27 | 313th | SP Rolando Arrojo Col |