| Round | Overall | Player |
|---|---|---|
| 1 | 5th | OF Ken Griffey Jr Cin |
| 2 | 20th | 2B Craig Biggio Hou |
| 3 | 29th | OF Andruw Jones Atl |
| 4 | 44th | 3B Matt Williams Ari |
| 5 | 53rd | SP Kevin Millwood Atl |
| 6 | 68th | SS Tony Womack Ari |
| 7 | 77th | RP John Rocker Atl |
| 8 | 92nd | 1B Eric Karros LA |
| 9 | 101st | SP David Wells Tor |
| 10 | 116th | OF Juan Encarnacion Det |
| 11 | 125th | C Jason Varitek Bos |
| 12 | 140th | SP Jose Rosado KC |
| 13 | 149th | OF Carlos Lee ChA |
| 14 | 164th | C Ben Petrick Col |
| 15 | 173rd | 2B Eric Young ChN |
| 16 | 188th | SP Rick Reed NYN |
| 17 | 197th | SP Todd Stottlemyre Ari |
| 18 | 212th | SS Jose Hernandez Mil |
| 19 | 221st | SP Jon Lieber ChN |
| 20 | 236th | 1B Rico Brogna Phi |
| 21 | 245th | OF Ellis Burks SF |
| 22 | 260th | 3B Phil Nevin SD |
| 23 | 269th | SP Omar Olivares Oak |
| 24 | 284th | OF Chris Singleton ChA |
| 25 | 293rd | SP A.J. Burnett Fla |
| 26 | 308th | SP Gil Heredia Oak |
| 27 | 317th | SP Tim Belcher Ana |