| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | SS Derek Jeter NYA |
| 2 | 23rd | OF Juan Gonzalez Det |
| 3 | 26th | RP Mariano Rivera NYA |
| 4 | 47th | 2B Ray Durham ChA |
| 5 | 50th | 1B Mo Vaughn Ana |
| 6 | 71st | 3B Robin Ventura NYN |
| 7 | 74th | 1B Frank Thomas ChA |
| 8 | 95th | SP Tim Hudson Oak |
| 9 | 98th | 1B Tony Clark Det |
| 10 | 119th | C Jorge Posada NYA |
| 11 | 122nd | OF Ray Lankford StL |
| 12 | 143rd | OF Ruben Mateo Tex |
| 13 | 146th | OF Dante Bichette Cin |
| 14 | 167th | RP Mike Timlin Bal |
| 15 | 170th | SP Pete Harnisch Cin |
| 16 | 191st | SP Octavio Dotel Hou |
| 17 | 194th | SP Jason Schmidt Pit |
| 18 | 215th | SP Kent Bottenfield Ana |
| 19 | 218th | RP John Johnstone SF |
| 20 | 239th | SP Francisco Cordova Pit |
| 21 | 242nd | SP Jeff Weaver Det |
| 22 | 263rd | SP Kelvim Escobar Tor |
| 23 | 266th | 2B Fernando Vina StL |
| 24 | 287th | SP Paul Byrd Phi |
| 25 | 290th | C Brent Mayne Col |
| 26 | 311th | SP Chris Holt Hou |
| 27 | 314th | SP Ed Yarnall NYA |