| Round | Overall | Player |
|---|---|---|
| 1 | 12th | SP Pedro Martinez Bos |
| 2 | 13th | 1B Mark McGwire StL |
| 3 | 36th | SP Kevin Brown LA |
| 4 | 37th | 1B Rafael Palmeiro Tex |
| 5 | 60th | RP Robb Nen SF |
| 6 | 61st | OF Magglio Ordonez ChA |
| 7 | 84th | OF Tim Salmon Ana |
| 8 | 85th | RP Mike Jackson Phi |
| 9 | 108th | OF Ben Grieve Oak |
| 10 | 109th | SP Curt Schilling Phi |
| 11 | 132nd | SP Chuck Finley Cle |
| 12 | 133rd | RP Bob Howry ChA |
| 13 | 156th | SP Russ Ortiz SF |
| 14 | 157th | C Todd Hundley LA |
| 15 | 180th | SP Sidney Ponson Bal |
| 16 | 181st | SP Alex Fernandez Fla |
| 17 | 204th | SP Kevin Appier Oak |
| 18 | 205th | OF Cliff Floyd Fla |
| 19 | 228th | 3B Joe Randa KC |
| 20 | 229th | SP Todd Ritchie Pit |
| 21 | 252nd | 2B Randy Velarde Oak |
| 22 | 253rd | C John Flaherty TB |
| 23 | 276th | RP Ricky Bottalico KC |
| 24 | 277th | OF B.J. Surhoff Bal |
| 25 | 300th | SS Damian Jackson SD |
| 26 | 301st | 3B Shane Andrews ChN |
| 27 | 324th | 1B J.T. Snow SF |