| Round | Overall | Player |
|---|---|---|
| 1 | 9th | 1B Jeff Bagwell Hou |
| 2 | 16th | 3B Scott Rolen Phi |
| 3 | 33rd | SP Randy Johnson Ari |
| 4 | 40th | SS Barry Larkin Cin |
| 5 | 57th | SP Roger Clemens NYA |
| 6 | 64th | RP John Wetteland Tex |
| 7 | 81st | OF Moises Alou Hou |
| 8 | 88th | 2B Damion Easley Det |
| 9 | 105th | RP Dave Veres StL |
| 10 | 112th | OF Jermaine Dye KC |
| 11 | 129th | SP Omar Daal Ari |
| 12 | 136th | OF Roger Cedeno Hou |
| 13 | 153rd | DH Edgar Martinez Sea |
| 14 | 160th | SP Dustin Hermanson Mon |
| 15 | 177th | SP Matt Clement SD |
| 16 | 184th | OF Preston Wilson Fla |
| 17 | 201st | RP Danny Graves Cin |
| 18 | 208th | 2B Homer Bush Tor |
| 19 | 225th | SP Ismael Valdez ChN |
| 20 | 232nd | 3B Todd Zeile NYN |
| 21 | 249th | SP John Halama Sea |
| 22 | 256th | C Mitch Meluskey Hou |
| 23 | 273rd | OF Paul O'Neill NYA |
| 24 | 280th | OF Chad Hermansen Pit |
| 25 | 297th | C Eli Marrero StL |
| 26 | 304th | 3B Corey Koskie Min |
| 27 | 321st | SP Brian Anderson Ari |