| Round | Overall | Player |
|---|---|---|
| 1 | 9th | C Mike Piazza NYN |
| 2 | 16th | OF Barry Bonds SF |
| 3 | 33rd | SP Kevin Brown LA |
| 4 | 40th | 1B Jim Thome Cle |
| 5 | 57th | RP John Rocker Atl |
| 6 | 64th | 2B Chuck Knoblauch NYA |
| 7 | 81st | 3B Vinny Castilla TB |
| 8 | 88th | RP Derek Lowe Bos |
| 9 | 105th | SS Miguel Tejada Oak |
| 10 | 112th | 1B Frank Thomas ChA |
| 11 | 129th | OF Matt Stairs Oak |
| 12 | 136th | SP Denny Neagle Cin |
| 13 | 153rd | 2B Jose Offerman Bos |
| 14 | 160th | 1B John Olerud Sea |
| 15 | 177th | RP Rick Aguilera ChN |
| 16 | 184th | OF David Justice Cle |
| 17 | 201st | SP Chan Ho Park LA |
| 18 | 208th | SP Ismael Valdez ChN |
| 19 | 225th | OF Brady Anderson Bal |
| 20 | 232nd | SP Mike Sirotka ChA |
| 21 | 249th | SP Todd Ritchie Pit |
| 22 | 256th | RP Mike Williams Pit |
| 23 | 273rd | SP Kevin Tapani ChN |
| 24 | 280th | SP Kip Wells ChA |
| 25 | 297th | C Jim Leyritz NYA |
| 26 | 304th | SP Bobby J. Jones NYN |
| 27 | 321st | OF Rickey Henderson NYN |