| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Nomar Garciaparra Bos |
| 2 | 24th | OF Juan Gonzalez Det |
| 3 | 25th | 3B Scott Rolen Phi |
| 4 | 48th | 2B Jeff Kent SF |
| 5 | 49th | OF Brian S. Giles Pit |
| 6 | 72nd | RP Matt Mantei Ari |
| 7 | 73rd | RP Mike Jackson Phi |
| 8 | 96th | OF Dante Bichette Cin |
| 9 | 97th | 1B Mike Sweeney KC |
| 10 | 120th | DH John Jaha Oak |
| 11 | 121st | OF Jeffrey Hammonds Col |
| 12 | 144th | C Todd Hundley LA |
| 13 | 145th | RP Paul Shuey Cle |
| 14 | 168th | RP Todd Jones Det |
| 15 | 169th | SP Dave Burba Cle |
| 16 | 192nd | DH Robert Fick Det |
| 17 | 193rd | SP Ryan Rupe TB |
| 18 | 216th | 3B Aramis Ramirez Pit |
| 19 | 217th | OF Gabe Kapler Tex |
| 20 | 240th | SP Roy Halladay Tor |
| 21 | 241st | SP Darren Dreifort LA |
| 22 | 264th | 1B Ryan Klesko SD |
| 23 | 265th | 1B Pat Burrell Phi |
| 24 | 288th | SP Gil Meche Sea |
| 25 | 289th | SP Kelvim Escobar Tor |
| 26 | 312th | C Mitch Meluskey Hou |
| 27 | 313th | SP Juan Pena Bos |