| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | SS Alex Rodriguez Sea |
| 2 | 23rd | C Jason Kendall Pit |
| 3 | 26th | RP Billy Wagner Hou |
| 4 | 47th | RP Trevor Hoffman SD |
| 5 | 50th | 2B Ray Durham ChA |
| 6 | 71st | OF Moises Alou Hou |
| 7 | 74th | SP Orlando Hernandez NYA |
| 8 | 95th | 1B Andres Galarraga Atl |
| 9 | 98th | OF Jim Edmonds StL |
| 10 | 119th | OF Ray Lankford StL |
| 11 | 122nd | SP Kris Benson Pit |
| 12 | 143rd | OF Ruben Mateo Tex |
| 13 | 146th | DH Edgar Martinez Sea |
| 14 | 167th | SP Eric Milton Min |
| 15 | 170th | SP Ramon Martinez Bos |
| 16 | 191st | OF Darin Erstad Ana |
| 17 | 194th | 3B Michael Barrett Mon |
| 18 | 215th | SP Scott Elarton Hou |
| 19 | 218th | OF Roger Cedeno Hou |
| 20 | 239th | 2B Quilvio Veras Atl |
| 21 | 242nd | 3B Mike Lowell Fla |
| 22 | 263rd | SP Bruce Chen Atl |
| 23 | 266th | SP Livan Hernandez SF |
| 24 | 287th | RP Ron Villone Cin |
| 25 | 290th | 1B Brian Daubach Bos |
| 26 | 311th | SS Mike Bordick Bal |
| 27 | 314th | C Eli Marrero StL |