| Round | Overall | Player |
|---|---|---|
| 1 | 5th | SS Derek Jeter NYA |
| 2 | 20th | OF Albert Belle Bal |
| 3 | 29th | C Javy Lopez Atl |
| 4 | 44th | 1B Sean Casey Cin |
| 5 | 53rd | RP Armando Benitez NYN |
| 6 | 68th | 3B Robin Ventura NYN |
| 7 | 77th | OF Jeromy Burnitz Mil |
| 8 | 92nd | SP Brad Radke Min |
| 9 | 101st | OF Ben Grieve Oak |
| 10 | 116th | SP Al Leiter NYN |
| 11 | 125th | 1B Erubiel Durazo Ari |
| 12 | 140th | OF J.D. Drew StL |
| 13 | 149th | SP Dustin Hermanson Mon |
| 14 | 164th | 2B Homer Bush Tor |
| 15 | 173rd | SP Jason Schmidt Pit |
| 16 | 188th | RP Anthony Alford Fla |
| 17 | 197th | 2B Bret Boone SD |
| 18 | 212th | OF Preston Wilson Fla |
| 19 | 221st | C Charles Johnson Bal |
| 20 | 236th | SP Rick Reed NYN |
| 21 | 245th | RP Ramiro Mendoza NYA |
| 22 | 260th | 3B Phil Nevin SD |
| 23 | 269th | SP John Smoltz Atl |
| 24 | 284th | SP Justin Thompson Tex |
| 25 | 293rd | SS Alex Gonzalez Tor |
| 26 | 308th | OF Ricky Ledee NYA |
| 27 | 317th | SP Brett Tomko Sea |