| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | 1B Mark McGwire StL |
| 2 | 22nd | 3B Fernando Tatis StL |
| 3 | 27th | 2B Roberto Alomar Cle |
| 4 | 46th | OF Raul Mondesi Tor |
| 5 | 51st | OF Bobby Abreu Phi |
| 6 | 70th | OF Carl Everett Bos |
| 7 | 75th | OF Carlos Beltran KC |
| 8 | 94th | SP Roger Clemens NYA |
| 9 | 99th | SS Edgar Renteria StL |
| 10 | 118th | SP Andy Ashby Phi |
| 11 | 123rd | RP Dave Veres StL |
| 12 | 142nd | OF Doug Glanville Phi |
| 13 | 147th | 3B Adrian Beltre LA |
| 14 | 166th | SP Brian Anderson Ari |
| 15 | 171st | SP Rick Ankiel StL |
| 16 | 190th | SP Andy Benes StL |
| 17 | 195th | SP Kerry Wood ChN |
| 18 | 214th | C Brad Ausmus Det |
| 19 | 219th | 1B Rico Brogna Phi |
| 20 | 238th | SP Ed Yarnall NYA |
| 21 | 243rd | C Dan Wilson Sea |
| 22 | 262nd | SP Steve Woodard Mil |
| 23 | 267th | OF Mark Quinn KC |
| 24 | 286th | SP Paul Byrd Phi |
| 25 | 291st | 2B Todd Walker Min |
| 26 | 310th | DH Jeremy Giambi Oak |
| 27 | 315th | RP Orber Moreno KC |