| Round | Overall | Player |
|---|---|---|
| 1 | 10th | OF Ken Griffey Jr Cin |
| 2 | 15th | SP Randy Johnson Ari |
| 3 | 34th | 1B Todd Helton Col |
| 4 | 39th | SP Mike Mussina Bal |
| 5 | 58th | SP Bartolo Colon Cle |
| 6 | 63rd | OF Gary Sheffield LA |
| 7 | 82nd | 1B Tony Clark Det |
| 8 | 87th | SP Tom Glavine Atl |
| 9 | 106th | SS Neifi Perez Col |
| 10 | 111th | SP Omar Daal Ari |
| 11 | 130th | RP Scott Williamson Cin |
| 12 | 135th | OF B.J. Surhoff Bal |
| 13 | 154th | 3B Travis Fryman Cle |
| 14 | 159th | 2B Mike Lansing Col |
| 15 | 178th | SP Darryl Kile StL |
| 16 | 183rd | OF Rondell White Mon |
| 17 | 202nd | SP Jon Lieber ChN |
| 18 | 207th | 3B Eric Chavez Oak |
| 19 | 226th | C Darrin Fletcher Tor |
| 20 | 231st | 3B Todd Zeile NYN |
| 21 | 250th | 2B Carlos Febles KC |
| 22 | 255th | SP Juan Guzman TB |
| 23 | 274th | C Chris Widger Mon |
| 24 | 279th | SP Wilson Alvarez TB |
| 25 | 298th | SS Mark Loretta Mil |
| 26 | 303rd | SP Carl Pavano Mon |
| 27 | 322nd | OF Richard Hidalgo Hou |