| Round | Overall | Player |
|---|---|---|
| 1 | 12th | OF Larry Walker Col |
| 2 | 13th | SP Pedro Martinez Bos |
| 3 | 36th | SP Kevin Millwood Atl |
| 4 | 37th | 3B Matt Williams Ari |
| 5 | 60th | OF Magglio Ordonez ChA |
| 6 | 61st | RP Billy Koch Tor |
| 7 | 84th | RP Robb Nen SF |
| 8 | 85th | OF Tim Salmon Ana |
| 9 | 108th | SP Tim Hudson Oak |
| 10 | 109th | SP Curt Schilling Phi |
| 11 | 132nd | 1B Eric Karros LA |
| 12 | 133rd | RP Bob Howry ChA |
| 13 | 156th | C Jorge Posada NYA |
| 14 | 157th | RP Jason Isringhausen Oak |
| 15 | 180th | SP Sidney Ponson Bal |
| 16 | 181st | 2B Damion Easley Det |
| 17 | 204th | 1B Paul Konerko ChA |
| 18 | 205th | SP Alex Fernandez Fla |
| 19 | 228th | OF Troy O'Leary Bos |
| 20 | 229th | SP Javier Vazquez Mon |
| 21 | 252nd | SP Rick Helling Tex |
| 22 | 253rd | C Sandy Alomar Jr. Cle |
| 23 | 276th | OF Henry Rodriguez ChN |
| 24 | 277th | SS Jose Hernandez Mil |
| 25 | 300th | SP Robert Person Phi |
| 26 | 301st | 1B Lee Stevens Mon |
| 27 | 324th | 3B John Valentin Bos |