| Round | Overall | Player |
|---|---|---|
| 1 | 5th | SP Pedro Martinez Bos |
| 2 | 20th | OF Barry Bonds SF |
| 3 | 29th | 1B Jim Thome Cle |
| 4 | 44th | OF Gary Sheffield LA |
| 5 | 53rd | RP Matt Mantei Ari |
| 6 | 68th | SS Neifi Perez Col |
| 7 | 77th | SP Shane Reynolds Hou |
| 8 | 92nd | C Jason Varitek Bos |
| 9 | 101st | 2B Pokey Reese Cin |
| 10 | 116th | DH Edgar Martinez Sea |
| 11 | 125th | 3B Travis Fryman Cle |
| 12 | 140th | SP Scott Elarton Hou |
| 13 | 149th | OF Rusty Greer Tex |
| 14 | 164th | SP Jose Rosado KC |
| 15 | 173rd | OF Carlos Lee ChA |
| 16 | 188th | 2B Homer Bush Tor |
| 17 | 197th | 3B Aaron Boone Cin |
| 18 | 212th | OF Cliff Floyd Fla |
| 19 | 221st | SP Esteban Loaiza Tex |
| 20 | 236th | SS Orlando Cabrera Mon |
| 21 | 245th | SP Darren Dreifort LA |
| 22 | 260th | 1B Will Clark Bal |
| 23 | 269th | C Chris Widger Mon |
| 24 | 284th | 1B Brad Fullmer Tor |
| 25 | 293rd | SP Juan Guzman TB |
| 26 | 308th | SP Joe Nathan SF |
| 27 | 317th | OF Dmitri Young Cin |