| Round | Overall | Player |
|---|---|---|
| 1 | 9th | C Mike Piazza NYN |
| 2 | 16th | OF Albert Belle Bal |
| 3 | 33rd | RP Mariano Rivera NYA |
| 4 | 40th | 2B Chuck Knoblauch NYA |
| 5 | 57th | 3B Matt Williams Ari |
| 6 | 64th | RP Troy Percival Ana |
| 7 | 81st | RP Derek Lowe Bos |
| 8 | 88th | OF Greg Vaughn TB |
| 9 | 105th | SP Roger Clemens NYA |
| 10 | 112th | 1B Andres Galarraga Atl |
| 11 | 129th | SP Kris Benson Pit |
| 12 | 136th | DH John Jaha Oak |
| 13 | 153rd | OF Luis Gonzalez Ari |
| 14 | 160th | OF B.J. Surhoff Bal |
| 15 | 177th | RP Rick Aguilera ChN |
| 16 | 184th | SS Alex Gonzalez Fla |
| 17 | 201st | 2B Eric Young ChN |
| 18 | 208th | SP Sidney Ponson Bal |
| 19 | 225th | SP Ramon Martinez Bos |
| 20 | 232nd | OF Troy O'Leary Bos |
| 21 | 249th | 1B Rico Brogna Phi |
| 22 | 256th | RP Kazuhiro Sasaki Sea |
| 23 | 273rd | OF Preston Wilson Fla |
| 24 | 280th | 2B David Bell Sea |
| 25 | 297th | SP Justin Thompson Tex |
| 26 | 304th | SP Brian Rose Bos |
| 27 | 321st | 3B Greg Norton ChA |