| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | SS Nomar Garciaparra Bos |
| 2 | 22nd | 1B Carlos Delgado Tor |
| 3 | 27th | 1B Mo Vaughn Ana |
| 4 | 46th | SP Mike Mussina Bal |
| 5 | 51st | RP Armando Benitez NYN |
| 6 | 70th | SP Bartolo Colon Cle |
| 7 | 75th | SP Jose Lima Hou |
| 8 | 94th | 3B Ken Caminiti Hou |
| 9 | 99th | OF Ray Lankford StL |
| 10 | 118th | OF Jeffrey Hammonds Col |
| 11 | 123rd | OF Dante Bichette Cin |
| 12 | 142nd | RP Paul Shuey Cle |
| 13 | 147th | 1B Pat Burrell Phi |
| 14 | 166th | RP Jason Isringhausen Oak |
| 15 | 171st | SP Kevin Appier Oak |
| 16 | 190th | SP Rick Ankiel StL |
| 17 | 195th | OF Ellis Burks SF |
| 18 | 214th | 2B Todd Walker Min |
| 19 | 219th | C John Flaherty TB |
| 20 | 238th | OF David Justice Cle |
| 21 | 243rd | 1B Ryan Klesko SD |
| 22 | 262nd | SP Scott Erickson Bal |
| 23 | 267th | SP Alex Fernandez Fla |
| 24 | 286th | C Mitch Meluskey Hou |
| 25 | 291st | SP Kirk Rueter SF |
| 26 | 310th | SP Wilson Alvarez TB |
| 27 | 315th | 3B Jose Vidro Mon |