| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Alex Rodriguez Sea |
| 2 | 24th | 3B Scott Rolen Phi |
| 3 | 25th | 1B Rafael Palmeiro Tex |
| 4 | 48th | OF Bernie Williams NYA |
| 5 | 49th | RP Trevor Hoffman SD |
| 6 | 72nd | OF Andruw Jones Atl |
| 7 | 73rd | SP Orlando Hernandez NYA |
| 8 | 96th | SP Al Leiter NYN |
| 9 | 97th | OF Shannon Stewart Tor |
| 10 | 120th | SP Brad Radke Min |
| 11 | 121st | 3B Adrian Beltre LA |
| 12 | 144th | SP David Wells Tor |
| 13 | 145th | 1B Tino Martinez NYA |
| 14 | 168th | C Darrin Fletcher Tor |
| 15 | 169th | RP Todd Jones Det |
| 16 | 192nd | OF Geoff Jenkins Mil |
| 17 | 193rd | OF Ruben Mateo Tex |
| 18 | 216th | 1B Fred McGriff TB |
| 19 | 217th | SP Mike Sirotka ChA |
| 20 | 240th | OF Brady Anderson Bal |
| 21 | 241st | 2B Warren Morris Pit |
| 22 | 264th | 3B Michael Barrett Mon |
| 23 | 265th | SP Kent Bottenfield Ana |
| 24 | 288th | C Sandy Alomar Jr. Cle |
| 25 | 289th | 1B Travis Lee Ari |
| 26 | 312th | SP Brian Moehler Det |
| 27 | 313th | OF Tom Goodwin Col |