| Round | Overall | Player |
|---|---|---|
| 1 | 12th | 2B Roberto Alomar Cle |
| 2 | 13th | OF Vladimir Guerrero Mon |
| 3 | 36th | 1B Sean Casey Cin |
| 4 | 37th | 3B Jeff Cirillo Col |
| 5 | 60th | RP Jeff Shaw LA |
| 6 | 61st | RP Roberto Hernandez TB |
| 7 | 84th | OF Tim Salmon Ana |
| 8 | 85th | C Eddie Taubensee Cin |
| 9 | 108th | OF Matt Stairs Oak |
| 10 | 109th | 1B John Olerud Sea |
| 11 | 132nd | RP Danny Graves Cin |
| 12 | 133rd | 1B Mike Sweeney KC |
| 13 | 156th | RP Mike Timlin Bal |
| 14 | 157th | SS Rich Aurilia SF |
| 15 | 180th | 3B Joe Randa KC |
| 16 | 181st | RP Jose Mesa Sea |
| 17 | 204th | SP Kerry Wood ChN |
| 18 | 205th | C Charles Johnson Bal |
| 19 | 228th | OF Tony Gwynn SD |
| 20 | 229th | SP Dave Burba Cle |
| 21 | 252nd | SS Pat Meares Pit |
| 22 | 253rd | OF Marquis Grissom Mil |
| 23 | 276th | RP Mike Williams Pit |
| 24 | 277th | OF Derek Bell NYN |
| 25 | 300th | SS Mark Loretta Mil |
| 26 | 301st | 1B Mike Stanley Bos |
| 27 | 324th | RP David Lee Col |