| Round | Overall | Player |
|---|---|---|
| 1 | 7th | 1B Jeff Bagwell Hou |
| 2 | 18th | OF Barry Bonds SF |
| 3 | 31st | OF Albert Belle Bal |
| 4 | 42nd | C Mike Lieberthal Phi |
| 5 | 55th | 3B Robin Ventura NYN |
| 6 | 66th | SP John Smoltz Atl |
| 7 | 79th | SP Roger Clemens NYA |
| 8 | 90th | OF Jeromy Burnitz Mil |
| 9 | 103rd | OF Kenny Lofton Cle |
| 10 | 114th | RP Bob Howry ChA |
| 11 | 127th | 2B Eric Young ChN |
| 12 | 138th | RP Mike Timlin Bal |
| 13 | 151st | RP Ricky Bottalico KC |
| 14 | 162nd | SP David Wells Tor |
| 15 | 175th | 3B Todd Zeile NYN |
| 16 | 186th | 2B Damion Easley Det |
| 17 | 199th | SP Rick Reed NYN |
| 18 | 210th | C Charles Johnson Bal |
| 19 | 223rd | SS Deivi Cruz Det |
| 20 | 234th | SP Todd Stottlemyre Ari |
| 21 | 247th | C Dan Wilson Sea |
| 22 | 258th | SP Brett Tomko Sea |
| 23 | 271st | 3B Ed Sprague SD |
| 24 | 282nd | RP Mike Trombley Bal |
| 25 | 295th | SP Brian Moehler Det |
| 26 | 306th | RP Kerry Ligtenberg Atl |
| 27 | 319th | SS Kevin Elster LA |