| Round | Overall | Player |
|---|---|---|
| 1 | 5th | OF Ken Griffey Jr Cin |
| 2 | 20th | OF Larry Walker Col |
| 3 | 29th | 1B Todd Helton Col |
| 4 | 44th | RP Ugueth Urbina Mon |
| 5 | 53rd | SS Barry Larkin Cin |
| 6 | 68th | SP Jose Lima Hou |
| 7 | 77th | OF Carlos Beltran KC |
| 8 | 92nd | 3B Adrian Beltre LA |
| 9 | 101st | SP Tim Hudson Oak |
| 10 | 116th | RP Dave Veres StL |
| 11 | 125th | C Eddie Taubensee Cin |
| 12 | 140th | OF Jeffrey Hammonds Col |
| 13 | 149th | 3B Tony Batista Tor |
| 14 | 164th | 1B Erubiel Durazo Ari |
| 15 | 173rd | SP Freddy Garcia Sea |
| 16 | 188th | SP Pete Harnisch Cin |
| 17 | 197th | 2B Pokey Reese Cin |
| 18 | 212th | SS Rich Aurilia SF |
| 19 | 221st | RP Rick Aguilera ChN |
| 20 | 236th | C Chris Widger Mon |
| 21 | 245th | 2B Ron Belliard Mil |
| 22 | 260th | SP Pedro Astacio Col |
| 23 | 269th | SP Todd Ritchie Pit |
| 24 | 284th | 1B Lee Stevens Mon |
| 25 | 293rd | SP Steve Parris Cin |
| 26 | 308th | SP Ramon Ortiz Ana |
| 27 | 317th | OF Chris Singleton ChA |