| Round | Overall | Player |
|---|---|---|
| 1 | 8th | SP Pedro Martinez Bos |
| 2 | 17th | OF Shawn Green LA |
| 3 | 32nd | 3B Jeff Cirillo Col |
| 4 | 41st | OF Carl Everett Bos |
| 5 | 56th | OF Bobby Abreu Phi |
| 6 | 65th | 2B Jeff Kent SF |
| 7 | 80th | RP Troy Percival Ana |
| 8 | 89th | SP Rick Ankiel StL |
| 9 | 104th | RP Derek Lowe Bos |
| 10 | 113th | SP Ramon Martinez Bos |
| 11 | 128th | 1B Tony Clark Det |
| 12 | 137th | SP Kerry Wood ChN |
| 13 | 152nd | C Darrin Fletcher Tor |
| 14 | 161st | SS Mike Bordick Bal |
| 15 | 176th | 1B Paul Konerko ChA |
| 16 | 185th | SP Denny Neagle Cin |
| 17 | 200th | OF Ellis Burks SF |
| 18 | 209th | 3B Jose Vidro Mon |
| 19 | 224th | SP Chris Carpenter Tor |
| 20 | 233rd | OF Trot Nixon Bos |
| 21 | 248th | OF Mark Quinn KC |
| 22 | 257th | OF Troy O'Leary Bos |
| 23 | 272nd | SP Carl Pavano Mon |
| 24 | 281st | 1B Ryan Klesko SD |
| 25 | 296th | OF Carlos Lee ChA |
| 26 | 305th | SP Bruce Chen Atl |
| 27 | 320th | SP Mark Mulder Oak |