| Round | Overall | Player |
|---|---|---|
| 1 | 10th | C Ivan Rodriguez Tex |
| 2 | 15th | 2B Edgardo Alfonzo NYN |
| 3 | 34th | 3B Fernando Tatis StL |
| 4 | 39th | SP Greg Maddux Atl |
| 5 | 58th | OF Shannon Stewart Tor |
| 6 | 63rd | RP Jeff Shaw LA |
| 7 | 82nd | SS Miguel Tejada Oak |
| 8 | 87th | SP Tom Glavine Atl |
| 9 | 106th | OF Doug Glanville Phi |
| 10 | 111th | OF Ray Lankford StL |
| 11 | 130th | SP Chan Ho Park LA |
| 12 | 135th | 1B Eric Karros LA |
| 13 | 154th | SP Darren Dreifort LA |
| 14 | 159th | 3B Travis Fryman Cle |
| 15 | 178th | RP Anthony Alford Fla |
| 16 | 183rd | 1B Pat Burrell Phi |
| 17 | 202nd | OF Darin Erstad Ana |
| 18 | 207th | 3B Phil Nevin SD |
| 19 | 226th | 2B Mike Lansing Col |
| 20 | 231st | SP Bret Saberhagen Bos |
| 21 | 250th | OF B.J. Surhoff Bal |
| 22 | 255th | OF Marquis Grissom Mil |
| 23 | 274th | RP John Franco NYN |
| 24 | 279th | SP Kelvim Escobar Tor |
| 25 | 298th | OF Henry Rodriguez ChN |
| 26 | 303rd | C Brook Fordyce ChA |
| 27 | 322nd | RP Mike Williams Pit |