| Round | Overall | Player |
|---|---|---|
| 1 | 9th | OF Vladimir Guerrero Mon |
| 2 | 16th | 1B Mark McGwire StL |
| 3 | 33rd | RP Trevor Hoffman SD |
| 4 | 40th | SP Bartolo Colon Cle |
| 5 | 57th | 3B Vinny Castilla TB |
| 6 | 64th | SS Neifi Perez Col |
| 7 | 81st | 2B Homer Bush Tor |
| 8 | 88th | SP David Cone NYA |
| 9 | 105th | OF Juan Encarnacion Det |
| 10 | 112th | OF Rusty Greer Tex |
| 11 | 129th | SP Kevin Appier Oak |
| 12 | 136th | RP Todd Jones Det |
| 13 | 153rd | SP Dustin Hermanson Mon |
| 14 | 160th | C Brad Ausmus Det |
| 15 | 177th | SP Kent Bottenfield Ana |
| 16 | 184th | 1B Fred McGriff TB |
| 17 | 201st | OF Paul O'Neill NYA |
| 18 | 208th | 2B Fernando Vina StL |
| 19 | 225th | SS Orlando Cabrera Mon |
| 20 | 232nd | OF Tony Gwynn SD |
| 21 | 249th | OF Gabe Kapler Tex |
| 22 | 256th | DH Robert Fick Det |
| 23 | 273rd | OF Jacque Jones Min |
| 24 | 280th | RP Eddie Guardado Min |
| 25 | 297th | C Brent Mayne Col |
| 26 | 304th | 3B Greg Norton ChA |
| 27 | 321st | RP Francisco Cordero Tex |