| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Alex Rodriguez Sea |
| 2 | 24th | 1B Rafael Palmeiro Tex |
| 3 | 25th | 3B Matt Williams Ari |
| 4 | 48th | OF Raul Mondesi Tor |
| 5 | 49th | SP Orlando Hernandez NYA |
| 6 | 72nd | OF Greg Vaughn TB |
| 7 | 73rd | SP Shane Reynolds Hou |
| 8 | 96th | RP Scott Williamson Cin |
| 9 | 97th | OF Brian Jordan Atl |
| 10 | 120th | 2B Jose Offerman Bos |
| 11 | 121st | OF Ruben Mateo Tex |
| 12 | 144th | RP Danny Graves Cin |
| 13 | 145th | RP Bob Wickman Mil |
| 14 | 168th | C Ben Petrick Col |
| 15 | 169th | C Matthew LeCroy Min |
| 16 | 192nd | SP Octavio Dotel Hou |
| 17 | 193rd | SP Jamie Moyer Sea |
| 18 | 216th | 3B Corey Koskie Min |
| 19 | 217th | OF Geoff Jenkins Mil |
| 20 | 240th | SP Kevin Tapani ChN |
| 21 | 241st | SP Rick Helling Tex |
| 22 | 264th | OF Jose Cruz Jr Tor |
| 23 | 265th | SP Pat Hentgen StL |
| 24 | 288th | 1B Rico Brogna Phi |
| 25 | 289th | SP Steve Woodard Mil |
| 26 | 312th | SP Paul Byrd Phi |
| 27 | 313th | SP Darren Oliver Tex |