| Round | Overall | Player |
|---|---|---|
| 1 | 11th | 3B Chipper Jones Atl |
| 2 | 14th | 2B Roberto Alomar Cle |
| 3 | 35th | SP Greg Maddux Atl |
| 4 | 38th | C Javy Lopez Atl |
| 5 | 59th | OF Andruw Jones Atl |
| 6 | 62nd | SP Mike Mussina Bal |
| 7 | 83rd | 1B Frank Thomas ChA |
| 8 | 86th | 2B Ray Durham ChA |
| 9 | 107th | SP Al Leiter NYN |
| 10 | 110th | SP Rick Ankiel StL |
| 11 | 131st | OF Kenny Lofton Cle |
| 12 | 134th | RP Bob Howry ChA |
| 13 | 155th | 3B Troy Glaus Ana |
| 14 | 158th | SP Matt Clement SD |
| 15 | 179th | SS Neifi Perez Col |
| 16 | 182nd | SP Pat Hentgen StL |
| 17 | 203rd | SP Chris Carpenter Tor |
| 18 | 206th | SP Darryl Kile StL |
| 19 | 227th | 1B Pat Burrell Phi |
| 20 | 230th | OF Vernon Wells Tor |
| 21 | 251st | SP Jon Lieber ChN |
| 22 | 254th | C Ben Petrick Col |
| 23 | 275th | OF Corey Patterson ChN |
| 24 | 278th | SS Alex Gonzalez Tor |
| 25 | 299th | SP Ryan Rupe TB |
| 26 | 302nd | SP Gil Meche Sea |
| 27 | 323rd | 2B Carlos Guillen Sea |