| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Alex Rodriguez Sea |
| 2 | 24th | OF Bernie Williams NYA |
| 3 | 25th | 2B Edgardo Alfonzo NYN |
| 4 | 48th | 3B Matt Williams Ari |
| 5 | 49th | RP Jeff Shaw LA |
| 6 | 72nd | 1B Tino Martinez NYA |
| 7 | 73rd | RP Troy Percival Ana |
| 8 | 96th | 3B Tony Batista Tor |
| 9 | 97th | OF Matt Stairs Oak |
| 10 | 120th | 1B Tony Clark Det |
| 11 | 121st | RP Scott Williamson Cin |
| 12 | 144th | 2B Bret Boone SD |
| 13 | 145th | SP Rick Helling Tex |
| 14 | 168th | SP Bruce Chen Atl |
| 15 | 169th | OF Geoff Jenkins Mil |
| 16 | 192nd | C Darrin Fletcher Tor |
| 17 | 193rd | RP C.J. Nitkowski Det |
| 18 | 216th | C Kelly Stinnett Ari |
| 19 | 217th | OF Ricky Ledee NYA |
| 20 | 240th | SP Steve Parris Cin |
| 21 | 241st | 1B Lee Stevens Mon |
| 22 | 264th | SP Juan Guzman TB |
| 23 | 265th | SP Paul Byrd Phi |
| 24 | 288th | OF Gabe Kapler Tex |
| 25 | 289th | C Damian Miller Ari |
| 26 | 312th | SP Kevin Tapani ChN |
| 27 | 313th | OF Butch Huskey Min |