| Round | Overall | Player |
|---|---|---|
| 1 | 12th | OF Sammy Sosa ChN |
| 2 | 13th | SP Randy Johnson Ari |
| 3 | 36th | RP Billy Wagner Hou |
| 4 | 37th | 1B Jason Giambi Oak |
| 5 | 60th | OF Andruw Jones Atl |
| 6 | 61st | SP Mike Hampton NYN |
| 7 | 84th | C Jason Varitek Bos |
| 8 | 85th | OF Tim Salmon Ana |
| 9 | 108th | 1B Paul Konerko ChA |
| 10 | 109th | SS Tony Womack Ari |
| 11 | 132nd | SP Darryl Kile StL |
| 12 | 133rd | 2B Damion Easley Det |
| 13 | 156th | 3B Eric Chavez Oak |
| 14 | 157th | RP Rick Aguilera ChN |
| 15 | 180th | SP Dustin Hermanson Mon |
| 16 | 181st | OF Juan Encarnacion Det |
| 17 | 204th | SP Eric Milton Min |
| 18 | 205th | 2B Warren Morris Pit |
| 19 | 228th | 1B Travis Lee Ari |
| 20 | 229th | SP Jon Lieber ChN |
| 21 | 252nd | C Brent Mayne Col |
| 22 | 253rd | SP Hideki Irabu Mon |
| 23 | 276th | SP Livan Hernandez SF |
| 24 | 277th | SP Jaret Wright Cle |
| 25 | 300th | 3B Aramis Ramirez Pit |
| 26 | 301st | OF Al Martin SD |
| 27 | 324th | OF Tony Gwynn SD |