| Round | Overall | Player |
|---|---|---|
| 1 | 9th | C Ivan Rodriguez Tex |
| 2 | 16th | OF Shawn Green LA |
| 3 | 33rd | 2B Edgardo Alfonzo NYN |
| 4 | 40th | RP Ugueth Urbina Mon |
| 5 | 57th | RP Billy Koch Tor |
| 6 | 64th | OF Carl Everett Bos |
| 7 | 81st | 1B Sean Casey Cin |
| 8 | 88th | RP Derek Lowe Bos |
| 9 | 105th | 1B Erubiel Durazo Ari |
| 10 | 112th | 3B Tony Batista Tor |
| 11 | 129th | SP Freddy Garcia Sea |
| 12 | 136th | 2B Jose Offerman Bos |
| 13 | 153rd | SP Kris Benson Pit |
| 14 | 160th | OF Reggie Sanders Atl |
| 15 | 177th | DH Robert Fick Det |
| 16 | 184th | SP Chris Carpenter Tor |
| 17 | 201st | OF J.D. Drew StL |
| 18 | 208th | SP Mike Sirotka ChA |
| 19 | 225th | SS Mark Grudzielanek LA |
| 20 | 232nd | SP Javier Vazquez Mon |
| 21 | 249th | 1B Brad Fullmer Tor |
| 22 | 256th | SP Brian Rose Bos |
| 23 | 273rd | 3B Cal Ripken Bal |
| 24 | 280th | SP Brian Anderson Ari |
| 25 | 297th | OF Henry Rodriguez ChN |
| 26 | 304th | RP Kazuhiro Sasaki Sea |
| 27 | 321st | C Damian Miller Ari |