| Round | Overall | Player |
|---|---|---|
| 1 | 8th | 1B Mark McGwire StL |
| 2 | 17th | 1B Rafael Palmeiro Tex |
| 3 | 32nd | 3B Fernando Tatis StL |
| 4 | 41st | OF Raul Mondesi Tor |
| 5 | 56th | OF Bernie Williams NYA |
| 6 | 65th | OF Carlos Beltran KC |
| 7 | 80th | SP Tom Glavine Atl |
| 8 | 89th | SP David Cone NYA |
| 9 | 104th | SS Edgar Renteria StL |
| 10 | 113th | SP Andy Pettitte NYA |
| 11 | 128th | OF Doug Glanville Phi |
| 12 | 137th | RP Paul Shuey Cle |
| 13 | 152nd | SP Jose Rosado KC |
| 14 | 161st | SP Rick Ankiel StL |
| 15 | 176th | 3B Troy Glaus Ana |
| 16 | 185th | 2B Carlos Febles KC |
| 17 | 200th | C Dan Wilson Sea |
| 18 | 209th | 1B Mark Grace ChN |
| 19 | 224th | SP Paul Byrd Phi |
| 20 | 233rd | SP Ismael Valdez ChN |
| 21 | 248th | 3B Michael Barrett Mon |
| 22 | 257th | SP Ed Yarnall NYA |
| 23 | 272nd | C Mitch Meluskey Hou |
| 24 | 281st | OF Mark Quinn KC |
| 25 | 296th | DH Jeremy Giambi Oak |
| 26 | 305th | SS Rey Sanchez KC |
| 27 | 320th | RP Orber Moreno KC |