| Round | Overall | Player |
|---|---|---|
| 1 | 5th | 1B Jeff Bagwell Hou |
| 2 | 20th | 3B Jeff Cirillo Col |
| 3 | 29th | SP Kevin Millwood Atl |
| 4 | 44th | C Javy Lopez Atl |
| 5 | 53rd | 2B Ray Durham ChA |
| 6 | 68th | SS Barry Larkin Cin |
| 7 | 77th | SP Tim Hudson Oak |
| 8 | 92nd | OF Shannon Stewart Tor |
| 9 | 101st | 1B Mike Sweeney KC |
| 10 | 116th | SP Jamie Moyer Sea |
| 11 | 125th | OF Rusty Greer Tex |
| 12 | 140th | OF Ben Grieve Oak |
| 13 | 149th | SP Pete Harnisch Cin |
| 14 | 164th | RP Bob Howry ChA |
| 15 | 173rd | RP Bob Wickman Mil |
| 16 | 188th | 3B Aaron Boone Cin |
| 17 | 197th | OF B.J. Surhoff Bal |
| 18 | 212th | SP Matt Clement SD |
| 19 | 221st | 1B Rico Brogna Phi |
| 20 | 236th | RP Jose Mesa Sea |
| 21 | 245th | C Ben Davis SD |
| 22 | 260th | OF Steve Finley Ari |
| 23 | 269th | SP Darren Dreifort LA |
| 24 | 284th | 1B Lee Stevens Mon |
| 25 | 293rd | 2B Fernando Vina StL |
| 26 | 308th | OF Chad Hermansen Pit |
| 27 | 317th | SS Mark Loretta Mil |