| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | SS Derek Jeter NYA |
| 2 | 22nd | OF Larry Walker Col |
| 3 | 27th | 3B Scott Rolen Phi |
| 4 | 46th | 2B Jeff Kent SF |
| 5 | 51st | RP Armando Benitez NYN |
| 6 | 70th | OF Jeromy Burnitz Mil |
| 7 | 75th | RP John Rocker Atl |
| 8 | 94th | 1B Andres Galarraga Atl |
| 9 | 99th | OF Jeffrey Hammonds Col |
| 10 | 118th | OF Matt Stairs Oak |
| 11 | 123rd | DH John Jaha Oak |
| 12 | 142nd | 3B Ken Caminiti Hou |
| 13 | 147th | RP Mike Timlin Bal |
| 14 | 166th | RP Ricky Bottalico KC |
| 15 | 171st | SP Dave Burba Cle |
| 16 | 190th | SP Andy Benes StL |
| 17 | 195th | SP Roy Halladay Tor |
| 18 | 214th | C Ramon Hernandez Oak |
| 19 | 219th | SP Ryan Rupe TB |
| 20 | 238th | 1B Pat Burrell Phi |
| 21 | 243rd | C Matthew LeCroy Min |
| 22 | 262nd | SP Alex Fernandez Fla |
| 23 | 267th | OF David Justice Cle |
| 24 | 286th | SP Juan Guzman TB |
| 25 | 291st | C Ben Petrick Col |
| 26 | 310th | RP Ron Villone Cin |
| 27 | 315th | OF Jose Cruz Jr Tor |