| Round | Overall | Player |
|---|---|---|
| 1 | 12th | 2B Roberto Alomar Cle |
| 2 | 13th | SP Pedro Martinez Bos |
| 3 | 36th | 3B Jeff Cirillo Col |
| 4 | 37th | 1B Mo Vaughn Ana |
| 5 | 60th | SS Omar Vizquel Cle |
| 6 | 61st | RP Ugueth Urbina Mon |
| 7 | 84th | OF Dante Bichette Cin |
| 8 | 85th | SP Curt Schilling Phi |
| 9 | 108th | C Todd Hundley LA |
| 10 | 109th | OF Matt Stairs Oak |
| 11 | 132nd | OF Rusty Greer Tex |
| 12 | 133rd | SP Kevin Appier Oak |
| 13 | 156th | OF Ellis Burks SF |
| 14 | 157th | RP Bob Wickman Mil |
| 15 | 180th | SP Shawn Estes SF |
| 16 | 181st | 1B Lee Stevens Mon |
| 17 | 204th | SS Mike Bordick Bal |
| 18 | 205th | 2B Bret Boone SD |
| 19 | 228th | C Sandy Alomar Jr. Cle |
| 20 | 229th | SP Brian Moehler Det |
| 21 | 252nd | OF Jose Cruz Jr Tor |
| 22 | 253rd | 3B Greg Norton ChA |
| 23 | 276th | RP Turk Wendell NYN |
| 24 | 277th | SP Bret Saberhagen Bos |
| 25 | 300th | RP Doug Jones Oak |
| 26 | 301st | OF Marquis Grissom Mil |
| 27 | 324th | OF Tom Goodwin Col |