| Round | Overall | Player |
|---|---|---|
| 1 | 11th | C Mike Piazza NYN |
| 2 | 14th | OF Barry Bonds SF |
| 3 | 35th | 1B Todd Helton Col |
| 4 | 38th | 2B Edgardo Alfonzo NYN |
| 5 | 59th | OF Shannon Stewart Tor |
| 6 | 62nd | 1B Frank Thomas ChA |
| 7 | 83rd | RP Jeff Shaw LA |
| 8 | 86th | RP Bob Howry ChA |
| 9 | 107th | SP Andy Ashby Phi |
| 10 | 110th | OF Ben Grieve Oak |
| 11 | 131st | SP Jose Rosado KC |
| 12 | 134th | SP Aaron Sele Sea |
| 13 | 155th | SP Rick Ankiel StL |
| 14 | 158th | SP Eric Milton Min |
| 15 | 179th | OF Rondell White Mon |
| 16 | 182nd | 3B Eric Chavez Oak |
| 17 | 203rd | SP Ismael Valdez ChN |
| 18 | 206th | OF Derek Bell NYN |
| 19 | 227th | 3B Corey Koskie Min |
| 20 | 230th | SP Mike Sirotka ChA |
| 21 | 251st | OF Garret Anderson Ana |
| 22 | 254th | SP Bruce Chen Atl |
| 23 | 275th | SS Jose Hernandez Mil |
| 24 | 278th | SS Royce Clayton Tex |
| 25 | 299th | C Mitch Meluskey Hou |
| 26 | 302nd | 2B Luis Castillo Fla |
| 27 | 323rd | SP Bobby J. Jones NYN |