| Round | Overall | Player |
|---|---|---|
| 1 | 6th | SS Derek Jeter NYA |
| 2 | 19th | OF Shawn Green LA |
| 3 | 30th | 3B Scott Rolen Phi |
| 4 | 43rd | 1B Jim Thome Cle |
| 5 | 54th | OF Andruw Jones Atl |
| 6 | 67th | RP Billy Koch Tor |
| 7 | 78th | RP John Rocker Atl |
| 8 | 91st | 2B Ray Durham ChA |
| 9 | 102nd | SP Tim Hudson Oak |
| 10 | 115th | OF Tim Salmon Ana |
| 11 | 126th | RP Derek Lowe Bos |
| 12 | 139th | SP Chuck Finley Cle |
| 13 | 150th | OF Jeffrey Hammonds Col |
| 14 | 163rd | 1B Tino Martinez NYA |
| 15 | 174th | SP Chris Carpenter Tor |
| 16 | 187th | OF Darin Erstad Ana |
| 17 | 198th | SP Sidney Ponson Bal |
| 18 | 211th | 3B Aaron Boone Cin |
| 19 | 222nd | SP Jeff Suppan KC |
| 20 | 235th | C Brent Mayne Col |
| 21 | 246th | OF Ruben Mateo Tex |
| 22 | 259th | C Ben Petrick Col |
| 23 | 270th | SP Rick Reed NYN |
| 24 | 283rd | SP Scott Erickson Bal |
| 25 | 294th | SP Jaret Wright Cle |
| 26 | 307th | SP Justin Thompson Tex |
| 27 | 318th | SP Ramon Ortiz Ana |