| Round | Overall | Player |
|---|---|---|
| 1 | 4th | OF Ken Griffey Jr Cin |
| 2 | 21st | 2B Edgardo Alfonzo NYN |
| 3 | 28th | 1B Todd Helton Col |
| 4 | 45th | SP Kevin Millwood Atl |
| 5 | 52nd | SP Mike Mussina Bal |
| 6 | 69th | OF Andruw Jones Atl |
| 7 | 76th | SP Orlando Hernandez NYA |
| 8 | 93rd | OF Tim Salmon Ana |
| 9 | 100th | SS Edgar Renteria StL |
| 10 | 117th | 1B Andres Galarraga Atl |
| 11 | 124th | SP Andy Pettitte NYA |
| 12 | 141st | OF Johnny Damon KC |
| 13 | 148th | SP Aaron Sele Sea |
| 14 | 165th | SP Chan Ho Park LA |
| 15 | 172nd | C Charles Johnson Bal |
| 16 | 189th | 3B Joe Randa KC |
| 17 | 196th | SP Sterling Hitchcock SD |
| 18 | 213th | SP Andy Benes StL |
| 19 | 220th | C Brad Ausmus Det |
| 20 | 237th | OF Cliff Floyd Fla |
| 21 | 244th | SP Jeff Suppan KC |
| 22 | 261st | SS Jose Valentin ChA |
| 23 | 268th | SP Pedro Astacio Col |
| 24 | 285th | 3B Mike Lowell Fla |
| 25 | 292nd | 1B J.T. Snow SF |
| 26 | 309th | RP Steve Karsay Cle |
| 27 | 316th | 3B Jose Vidro Mon |