| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | SS Derek Jeter NYA |
| 2 | 22nd | OF Shawn Green LA |
| 3 | 27th | 3B Scott Rolen Phi |
| 4 | 46th | RP Trevor Hoffman SD |
| 5 | 51st | 2B Ray Durham ChA |
| 6 | 70th | SP Bartolo Colon Cle |
| 7 | 75th | OF Carlos Beltran KC |
| 8 | 94th | OF Brian Jordan Atl |
| 9 | 99th | 1B Eric Karros LA |
| 10 | 118th | SP Brad Radke Min |
| 11 | 123rd | SP Jose Rosado KC |
| 12 | 142nd | C Darrin Fletcher Tor |
| 13 | 147th | SP Denny Neagle Cin |
| 14 | 166th | 1B Paul Konerko ChA |
| 15 | 171st | OF Rusty Greer Tex |
| 16 | 190th | SP Scott Elarton Hou |
| 17 | 195th | SP Esteban Loaiza Tex |
| 18 | 214th | RP Jose Mesa Sea |
| 19 | 219th | DH John Jaha Oak |
| 20 | 238th | RP Jerry Dipoto Col |
| 21 | 243rd | OF Preston Wilson Fla |
| 22 | 262nd | SP Ryan Rupe TB |
| 23 | 267th | 2B Pokey Reese Cin |
| 24 | 286th | C Eli Marrero StL |
| 25 | 291st | SP Matt Morris StL |
| 26 | 310th | SP James Baldwin ChA |
| 27 | 315th | OF Garret Anderson Ana |