| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | SS Nomar Garciaparra Bos |
| 2 | 23rd | 2B Craig Biggio Hou |
| 3 | 26th | C Javy Lopez Atl |
| 4 | 47th | 3B Vinny Castilla TB |
| 5 | 50th | RP John Rocker Atl |
| 6 | 71st | OF Magglio Ordonez ChA |
| 7 | 74th | OF Bobby Abreu Phi |
| 8 | 95th | SP David Wells Tor |
| 9 | 98th | SP David Cone NYA |
| 10 | 119th | OF Steve Finley Ari |
| 11 | 122nd | RP Todd Jones Det |
| 12 | 143rd | SP Jon Lieber ChN |
| 13 | 146th | OF Ruben Mateo Tex |
| 14 | 167th | 1B Fred McGriff TB |
| 15 | 170th | 1B Ryan Klesko SD |
| 16 | 191st | SP Todd Stottlemyre Ari |
| 17 | 194th | OF Juan Encarnacion Det |
| 18 | 215th | SS Jose Hernandez Mil |
| 19 | 218th | SP Brian Moehler Det |
| 20 | 239th | SP Octavio Dotel Hou |
| 21 | 242nd | SP Gil Heredia Oak |
| 22 | 263rd | OF Dmitri Young Cin |
| 23 | 266th | C Dan Wilson Sea |
| 24 | 287th | 2B David Bell Sea |
| 25 | 290th | SP Javier Vazquez Mon |
| 26 | 311th | SP A.J. Burnett Fla |
| 27 | 314th | DH Darryl Strawberry F/A |