| Round | Overall | Player |
|---|---|---|
| 1 | 12th | OF Vladimir Guerrero Mon |
| 2 | 13th | OF Barry Bonds SF |
| 3 | 36th | 1B Jim Thome Cle |
| 4 | 37th | 1B Mo Vaughn Ana |
| 5 | 60th | OF Gary Sheffield LA |
| 6 | 61st | RP Troy Percival Ana |
| 7 | 84th | 3B Troy Glaus Ana |
| 8 | 85th | RP Jeff Shaw LA |
| 9 | 108th | 1B Richie Sexson Cle |
| 10 | 109th | OF Ray Lankford StL |
| 11 | 132nd | 2B Damion Easley Det |
| 12 | 133rd | SP Rick Reed NYN |
| 13 | 156th | SP Dustin Hermanson Mon |
| 14 | 157th | SP Kerry Wood ChN |
| 15 | 180th | 3B Ken Caminiti Hou |
| 16 | 181st | SP Pat Hentgen StL |
| 17 | 204th | OF Darin Erstad Ana |
| 18 | 205th | SP Darren Dreifort LA |
| 19 | 228th | C Sandy Alomar Jr. Cle |
| 20 | 229th | SP Kevin Tapani ChN |
| 21 | 252nd | SS Alex Gonzalez Tor |
| 22 | 253rd | 2B Warren Morris Pit |
| 23 | 276th | SS Mark Grudzielanek LA |
| 24 | 277th | OF Ricky Ledee NYA |
| 25 | 300th | SP Chris Holt Hou |
| 26 | 301st | SP Bobby J. Jones NYN |
| 27 | 324th | C Joe Girardi ChN |